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Showing below up to 435 results in range #51 to #485.

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  1. BAM to FASTQ
  2. BamGenotypeCheck
  3. BamPileup
  4. BamUtil
  5. BamUtil: FAQ
  6. BamUtil: asp
  7. BamUtil: bam2FastQ
  8. BamUtil: clipOverlap
  9. BamUtil: convert
  10. BamUtil: dedup
  11. BamUtil: diff
  12. BamUtil: dumpAsp
  13. BamUtil: dumpHeader
  14. BamUtil: dumpIndex
  15. BamUtil: dumpRefInfo
  16. BamUtil: explainFlags
  17. BamUtil: filter
  18. BamUtil: findCigars
  19. BamUtil: gapInfo
  20. BamUtil: indelDiscordance
  21. BamUtil: mergeBam
  22. BamUtil: polishBam
  23. BamUtil: readIndexedBam
  24. BamUtil: readReference
  25. BamUtil: recab
  26. BamUtil: revert
  27. BamUtil: splitBam
  28. BamUtil: splitChromosome
  29. BamUtil: squeeze
  30. BamUtil: stats
  31. BamUtil: trimBam
  32. BamUtil: validate
  33. BamUtil: writeRegion
  34. Bam read count
  35. Bar Harbor Statistical Genetics Workshop
  36. BaseQualityCheck
  37. Base Caller Summaries
  38. Basic Linux Intro
  39. Bayesdenovo
  40. Ben Lerch
  41. Better X Sessions from Home (NX)
  42. Biostatistics 501: Main Page
  43. Biostatistics 602: Main Page
  44. Biostatistics 615/815: Main Page
  45. Biostatistics 615/815 Fall 2011
  46. Biostatistics 615/815 Winter 2011
  47. Biostatistics 666: Advanced Coalescent, Changing Population Size
  48. Biostatistics 666: Advanced Coalescent, Computation with the Coalescent
  49. Biostatistics 666: Advanced Haplotype Estimation
  50. Biostatistics 666: Analysis of Copy Number Using Sequence Data
  51. Biostatistics 666: Analysis of Low Pass Sequence Data
  52. Biostatistics 666: Applications of the Lander-Green Algorithm
  53. Biostatistics 666: Association Tests in Structured Populations
  54. Biostatistics 666: Contemporary Human Genetics
  55. Biostatistics 666: Copy Number Variation
  56. Biostatistics 666: Core Competencies
  57. Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium
  58. Biostatistics 666: Genotype Imputation
  59. Biostatistics 666: Haplotype Association Tests
  60. Biostatistics 666: Haplotype Estimation
  61. Biostatistics 666: Hardy-Weinberg Equilibrium
  62. Biostatistics 666: Introduction to De Novo Assembly
  63. Biostatistics 666: Introduction to the Coalescent
  64. Biostatistics 666: Introduction to the E-M Algorithm
  65. Biostatistics 666: Introductory Lecture
  66. Biostatistics 666: Likelihood Calculations for Large Pedigrees
  67. Biostatistics 666: Linkage Analysis in Sibling Pairs
  68. Biostatistics 666: Linkage Disequilibrium
  69. Biostatistics 666: Linkage Tests for Pairs of Individuals
  70. Biostatistics 666: Main Page
  71. Biostatistics 666: Maximum Likelihood Allele Frequency Estimation
  72. Biostatistics 666: Modeling Recombination and Migration in the Coalescent
  73. Biostatistics 666: Modeling Variation in the Coalescent
  74. Biostatistics 666: Multipoint Analysis in Sibling Pairs
  75. Biostatistics 666: Power of Genomewide Association Studies
  76. Biostatistics 666: Rare Variant Burden Tests
  77. Biostatistics 666: Relationship Checking
  78. Biostatistics 666: The Lander-Green Algorithm
  79. Biostatistics 666: The Possible Triangle Constraint
  80. Biostatistics 666: Variance Component Analyses
  81. Biostatistics 666: Whole Genome Sequencing
  82. Biostatistics 815 Term Project
  83. Biostatistics 830: Core Competencies
  84. Biostatistics 830: Fall 2013 Edition
  85. Biostatistics 830: Main Page
  86. Biostatistics 830 - Code Snippets
  87. Biostatistics 866: Core Competencies
  88. Biostatistics 866: Main Page
  89. C++ Class: CigarRoller
  90. C++ Class: FastQFile
  91. C++ Class: InputFile
  92. C++ Class: Pedigree Example
  93. C++ Class: SamFile
  94. C++ Class: SamFileHeader
  95. C++ Class: SamRecord
  96. C++ Class Averages
  97. C++ Library: FASTQ Change Log
  98. C++ Library: general Change Log
  99. C++ Library: libStatGen
  100. CHARGE
  101. CSG Tech Talks
  102. CalcMatch
  103. CheckVCF.py
  104. ChunkChromosome
  105. CigarRoller Proposed Update
  106. Class Notes
  107. Code Sample: Generating Manhattan Plots in R
  108. Code Sample: Generating QQ Plots in R
  109. Computer How-Tos
  110. Configure GotCloud
  111. ContaminationDetection
  112. Creating a Snapshot on EC2
  113. Creating an AMI on EC2
  114. Dajiang Liu
  115. Debuggers
  116. DosageConvertor
  117. Dosage convertor
  118. EMADS
  119. EMADS Primary Analysis Plan
  120. EMMAX
  121. EPACTS
  122. EPACTS for DIAGRAM
  123. Editing Sequence Analysis Practice 2011/03/10
  124. Evaluating a Read Mapper on Simulated Data
  125. Example
  126. Examples of Read Mapping with Karma and BWA
  127. ExomePicks
  128. Exome Chip Design
  129. FASTA
  130. FTEC
  131. FamLDCaller
  132. FamRvTest command
  133. FamRvTest tutorial
  134. Famrvtest
  135. FastQValidator
  136. FastQ Validation Criteria
  137. Fst
  138. GBR60vc.conf
  139. GLF
  140. GREGOR
  141. GTDT
  142. GWAS
  143. Garlic
  144. Gene Ontology
  145. Generic Exome Analysis Plan
  146. Genezoom
  147. Genotype Likelihood Based Allele Balance
  148. Genotype Likelihood based Allele Frequency
  149. Genotype Likelihood based Hardy-Weinberg Test
  150. Genotype Likelihood based Inbreeding Coefficient
  151. Git Cheat Sheet
  152. Git FAQs
  153. GlfMerge
  154. GlfMultiples
  155. GlfSingle
  156. GlfTrio
  157. Goncalo Abecasis
  158. Goncalo Abecasis: Interview with Christiana Fogg
  159. GotCloud
  160. GotCloud: AMIs
  161. GotCloud: Alignment Pipeline
  162. GotCloud: Alignment Sub-Pipelines
  163. GotCloud: Amazon
  164. GotCloud: Amazon Demo
  165. GotCloud: Binary Releases
  166. GotCloud: Configuration
  167. GotCloud: Creating a New Pipeline
  168. GotCloud: FAQs
  169. GotCloud: Filters
  170. GotCloud: Genetic Reference and Resource Files
  171. GotCloud: GenomeSTRiP Pipeline
  172. GotCloud: RedHat Package
  173. GotCloud: Reference Files
  174. GotCloud: Source Releases
  175. GotCloud: Variant Calling Options
  176. GotCloud: Variant Calling Pipeline
  177. GotCloud: Versions
  178. Gzip
  179. Gzip File
  180. HAPMIX
  181. Haploxt
  182. Hardy Weinberg equilibrium
  183. How To Use Git
  184. How to use aspera
  185. IGFPipe
  186. IMPUTE2
  187. IMPUTE2: 1000 Genomes Imputation Cookbook
  188. Idriver
  189. Imputation Server: Example
  190. Indel
  191. Installing MinGW & MSYS on Windows
  192. Introduction to new students
  193. Jennifer Bragg-Gresham
  194. Karma
  195. Karma-colorspace
  196. Kyoto Encyclopedia of Genes and Genomes
  197. LASER
  198. Lars Fritsche
  199. LibStatGen: ASP
  200. LibStatGen: BAM
  201. LibStatGen: FASTQ
  202. LibStatGen: GLF
  203. LibStatGen: VCF
  204. LibStatGen: general
  205. LibStatGen Download
  206. LibStatGen Repository
  207. LibStatGen Troubleshooting
  208. LiftMap.py
  209. LiftOver
  210. LiftRsNumber.py
  211. Ligate Minimac
  212. Links to Sequence Analysis Tools
  213. LocusZoom
  214. LocusZoom Standalone
  215. M3VCF Files
  216. M3vcftools
  217. M3vcftools Usage
  218. MEAGA
  219. MERLIN format
  220. METAL
  221. METAL ADDFILTER
  222. METAL COLUMNCOUNTING
  223. METAL CUSTOMVARIABLE
  224. METAL Command Reference
  225. METAL Documentation
  226. METAL EFFECTLABEL
  227. METAL FAQ
  228. METAL GENOMICCONTROL
  229. METAL Glucose Example Script
  230. METAL LOGPVALUE
  231. METAL Quick Start
  232. METAL SOURCE
  233. METAL VERBOSE
  234. MaCH
  235. MaCH: 1000 Genomes Imputation Cookbook
  236. MaCH: Input Files
  237. MaCH: Pedigree with Integer Allele Codes
  238. MaCH: machX
  239. MaCH FAQ
  240. MaCH Options
  241. Mach2dat: Association with MACH output
  242. Mach DAC
  243. Main Page
  244. Make file tutorial
  245. Makefile.tool
  246. Mantra.cpp
  247. MappabilityScores
  248. Mapping Quality Scores
  249. Mary Kate Wing
  250. Merlin
  251. MetaMinimac
  252. Meta Analysis of SNPxEnvironment Interaction
  253. Minimac
  254. Minimac2
  255. Minimac3
  256. Minimac3 - Full List of Options
  257. Minimac3 ChangeLog
  258. Minimac3 Cookbook : Chromosome X Imputation
  259. Minimac3 Cookbook : Converting Files to VCF
  260. Minimac3 Cookbook : Pre-Phasing
  261. Minimac3 Examples
  262. Minimac3 Imputation Cookbook
  263. Minimac3 Info (Older Version)
  264. Minimac3 Info File
  265. Minimac3 Usage
  266. Minimac4
  267. Minimac4 - Full List of Options
  268. Minimac4 Documentation
  269. Minimac: 1000 Genomes Imputation Cookbook
  270. Minimac: Tutorial
  271. Minimac Command Reference
  272. Minimac Diagnostics
  273. Mount S3 Volume
  274. MutationFilter
  275. NHLBI Exome Sequencing Project
  276. NHLBI Informatics Resource
  277. New Fugue
  278. Outcomes For Mapping A Paired End
  279. Parameters.h
  280. PedScript
  281. PhoneHome
  282. Phred scale
  283. Pileup
  284. PileupBasedVariantCalling
  285. Polymutt
  286. Polymutt2
  287. Polymutt beta
  288. Power Calculations: Quantitative Traits
  289. QPLOT
  290. RAREFY
  291. RAREFY COMMAND
  292. RAREFY DOCUMENTATION
  293. RAREFY DOWNLOAD
  294. RAREFY FAQ
  295. RAREFY TUTORIAL
  296. RAREMETAL
  297. RAREMETALWORKER
  298. RAREMETALWORKER METHOD
  299. RAREMETALWORKER SPECIAL TOPICS
  300. RAREMETALWORKER X
  301. RAREMETALWORKER command reference
  302. RAREMETAL Change Log
  303. RAREMETAL Command Reference
  304. RAREMETAL DOWNLOAD & BUILD
  305. RAREMETAL Documentation
  306. RAREMETAL FAQ
  307. RAREMETAL METHOD
  308. Rare-metal-worker
  309. RareMETALS
  310. RareMETALS2
  311. RareMetals
  312. RareSimu
  313. Rare Variant Analysis and Meta-Analysis
  314. Rare variant tests
  315. Raremetal Incoming updates
  316. Read Mapping
  317. Regions of high linkage disequilibrium (LD)
  318. Relationship between Ploidy, Alleles and Genotypes
  319. RelativeFinder
  320. Releasing GotCloud
  321. RvTests
  322. Rvtests
  323. SAM
  324. SAM/BAM Classes FAQs
  325. SAM/BAM Convert Sequence
  326. SAM: Filtering Reads
  327. SAM Validation Criteria
  328. SAV Command Line Interface
  329. SAV File Format
  330. SEQMIX
  331. SNP Call Set Properties
  332. Sam Library Usage Examples
  333. Samtools-hybrid
  334. Sara Rashkin
  335. SardiNIA
  336. SardiNIA project meeting July 15-16, 2013
  337. SavR
  338. Savvy C++ Library
  339. Sayantan Das
  340. Scott Vrieze
  341. Screen Commands
  342. Sean Caron
  343. SeqShop: Aligning Your Own Genome, December 2014
  344. SeqShop: Aligning Your Own Genome, June 2014
  345. SeqShop: Aligning Your Own Genome, May 2015
  346. SeqShop: Analysis of Structural Variation Practical, December 2014
  347. SeqShop: Analysis of Structural Variation Practical, June 2014
  348. SeqShop: Analysis of Structural Variation Practical, May 2015
  349. SeqShop: Ancestry On Your Own Genome, December 2014
  350. SeqShop: Ancestry On Your Own Genome, June 2014
  351. SeqShop: Ancestry On Your Own Genome, May 2015
  352. SeqShop: Association Analysis, May 2015
  353. SeqShop: Calling Your Own Genome, December 2014
  354. SeqShop: Calling Your Own Genome, June 2014
  355. SeqShop: Calling Your Own Genome, May 2015
  356. SeqShop: December 2014
  357. SeqShop: Estimates of Genetic Ancestry Practical, December 2014
  358. SeqShop: Estimates of Genetic Ancestry Practical, June 2014
  359. SeqShop: Estimates of Genetic Ancestry Practical, May 2015
  360. SeqShop: Friday - Practicing what we learned, June 2014
  361. SeqShop: Genetic Association Analysis Practical, December 2014
  362. SeqShop: Genetic Association Analysis Practical, June 2014
  363. SeqShop: June 2014
  364. SeqShop: May 2015
  365. SeqShop: Sequence Mapping and Assembly Practical, December 2014
  366. SeqShop: Sequence Mapping and Assembly Practical, June 2014
  367. SeqShop: Sequence Mapping and Assembly Practical, May 2015
  368. SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
  369. SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014
  370. SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015
  371. SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
  372. SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
  373. SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015
  374. Sequence Analysis Practice 2011/03/09
  375. Sequencing Workshop Analysis of Indels
  376. Short Workshops
  377. Shuang Feng
  378. Software
  379. SplitPed
  380. SplitRef
  381. StarCluster
  382. StatgenTools
  383. StatsTools
  384. Stouffer Method for Meta-Analysis
  385. StringMap.h
  386. Summary Statistics Files Specification for RAREMETAL and rvtests
  387. TOPMed Site Visit 2018
  388. TabAnno
  389. Tandem Repeat Concepts
  390. Test EPACTS for DIAGRAM
  391. Thunder
  392. ThunderVCF
  393. TinySimulator
  394. Tom Blackwell
  395. Tramp
  396. Trial Enrichment
  397. TrioCaller
  398. TrioCaller:Archive
  399. Triodenovo
  400. Tutorial: EMMAX GotCloud STOM
  401. Tutorial: EMMAX GotCloud STOM: Lecture 2
  402. Tutorial: EMMAX GotCloud STOM: Lecture 5
  403. Tutorial: EMMAX GotCloud STOM: Lecture 6
  404. Tutorial: EMMAX GotCloud STOM: Lecture 8
  405. Tutorial: GotCloud
  406. Tutorial: GotCloud UW CMG
  407. Tutorial: Low Pass Sequence Analysis
  408. Tutorial: Low Pass Sequence Analysis Answers
  409. Tutorial: RAREMETAL
  410. UMAKE
  411. UMAKE-glfSingle
  412. Understanding QPLOT output
  413. Understanding VerifyBamID output
  414. Understanding vcf-summary output
  415. Using Git Example
  416. Using Gotcloud on Flux
  417. Utility Library
  418. VCF
  419. VICES
  420. Variant Call Pipeline
  421. Variant Normalization
  422. Variant classification
  423. Vcf2geno
  424. VcfCodingSnps
  425. VcfCooker
  426. VcfGenomeStat
  427. VcfRefGen
  428. VerifyBamID
  429. VerifyIDintensity
  430. Verifying Sample Identities - Implementation
  431. Vmatch
  432. Vpeep
  433. Vt
  434. Xiaowei Zhan
  435. Zlib

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