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  1. Parameters.h‏‎ (03:26, 26 November 2009)
  2. StringMap.h‏‎ (03:31, 26 November 2009)
  3. Utility Library‏‎ (03:32, 26 November 2009)
  4. Mantra.cpp‏‎ (15:09, 8 December 2009)
  5. CHARGE‏‎ (19:05, 17 December 2009)
  6. An example of using libcsg‏‎ (00:39, 15 January 2010)
  7. Karma-colorspace‏‎ (23:54, 27 January 2010)
  8. Biostatistics 666: Advanced Coalescent, Changing Population Size‏‎ (23:00, 15 February 2010)
  9. Biostatistics 666: Advanced Coalescent, Computation with the Coalescent‏‎ (23:01, 15 February 2010)
  10. Mapping Quality Scores‏‎ (03:21, 18 February 2010)
  11. Outcomes For Mapping A Paired End‏‎ (16:52, 19 February 2010)
  12. Links to Sequence Analysis Tools‏‎ (11:42, 26 February 2010)
  13. 1000 Genomes Project Pilot 1 SNP Calling‏‎ (13:35, 10 March 2010)
  14. Base Caller Summaries‏‎ (17:04, 12 March 2010)
  15. MappabilityScores‏‎ (07:17, 18 March 2010)
  16. Biostatistics 666: The Possible Triangle Constraint‏‎ (07:43, 23 March 2010)
  17. Phred scale‏‎ (16:17, 23 March 2010)
  18. Biostatistics 666: Multipoint Analysis in Sibling Pairs‏‎ (19:33, 23 March 2010)
  19. FASTA‏‎ (19:39, 23 March 2010)
  20. Biostatistics 666: Relationship Checking‏‎ (05:59, 30 March 2010)
  21. METAL Glucose Example Script‏‎ (07:14, 30 March 2010)
  22. GWAS‏‎ (11:39, 30 March 2010)
  23. Biostatistics 666: The Lander-Green Algorithm‏‎ (00:52, 1 April 2010)
  24. Gene Ontology‏‎ (01:32, 2 April 2010)
  25. Stouffer Method for Meta-Analysis‏‎ (11:55, 5 April 2010)
  26. METAL Quick Start‏‎ (13:11, 5 April 2010)
  27. METAL COLUMNCOUNTING‏‎ (00:21, 6 April 2010)
  28. METAL LOGPVALUE‏‎ (00:22, 6 April 2010)
  29. METAL CUSTOMVARIABLE‏‎ (00:24, 6 April 2010)
  30. METAL ADDFILTER‏‎ (00:32, 6 April 2010)
  31. METAL VERBOSE‏‎ (00:36, 6 April 2010)
  32. METAL SOURCE‏‎ (00:39, 6 April 2010)
  33. METAL EFFECTLABEL‏‎ (00:39, 6 April 2010)
  34. Biostatistics 666: Applications of the Lander-Green Algorithm‏‎ (23:13, 7 April 2010)
  35. C++ Class: Pedigree Example‏‎ (16:37, 13 April 2010)
  36. Kyoto Encyclopedia of Genes and Genomes‏‎ (00:13, 21 April 2010)
  37. Verifying Sample Identities - Implementation‏‎ (10:25, 29 April 2010)
  38. TinySimulator‏‎ (19:26, 7 May 2010)
  39. Merlin‏‎ (00:16, 20 May 2010)
  40. Generic Exome Analysis Plan‏‎ (13:07, 21 May 2010)
  41. Biostatistics 666: Linkage Tests for Pairs of Individuals‏‎ (10:37, 26 May 2010)
  42. Indel‏‎ (20:44, 30 May 2010)
  43. GlfMerge‏‎ (03:36, 4 June 2010)
  44. PedScript‏‎ (05:23, 4 June 2010)
  45. MaCH: Pedigree with Integer Allele Codes‏‎ (10:24, 4 June 2010)
  46. METAL FAQ‏‎ (11:54, 9 June 2010)
  47. GlfMultiples‏‎ (10:23, 16 June 2010)
  48. Power Calculations: Quantitative Traits‏‎ (11:02, 17 June 2010)
  49. MERLIN format‏‎ (04:32, 22 June 2010)
  50. MaCH Options‏‎ (22:35, 28 June 2010)
  51. C++ Class Averages‏‎ (12:27, 2 August 2010)
  52. CigarRoller Proposed Update‏‎ (11:11, 4 August 2010)
  53. BaseQualityCheck‏‎ (04:35, 27 August 2010)
  54. SAM Validation Criteria‏‎ (15:51, 27 August 2010)
  55. Biostatistics 666: Introductory Lecture‏‎ (10:14, 7 September 2010)
  56. Gzip File‏‎ (23:16, 8 September 2010)
  57. Evaluating a Read Mapper on Simulated Data‏‎ (23:19, 8 September 2010)
  58. NHLBI Exome Sequencing Project‏‎ (21:44, 14 September 2010)
  59. SAM: Filtering Reads‏‎ (17:25, 21 September 2010)
  60. New Fugue‏‎ (13:35, 27 September 2010)
  61. Tramp‏‎ (23:47, 29 September 2010)
  62. Fst‏‎ (03:47, 3 October 2010)
  63. Biostatistics 666: Haplotype Association Tests‏‎ (00:34, 12 October 2010)
  64. Haploxt‏‎ (18:22, 21 October 2010)
  65. Genotype Likelihood Based Allele Balance‏‎ (15:22, 22 October 2010)
  66. Biostatistics 666: Association Tests in Structured Populations‏‎ (04:30, 26 October 2010)
  67. VcfGenomeStat‏‎ (00:35, 2 November 2010)
  68. Read Mapping‏‎ (22:53, 17 November 2010)
  69. Gzip‏‎ (22:53, 17 November 2010)
  70. RelativeFinder‏‎ (04:17, 23 November 2010)
  71. MaCH‏‎ (08:34, 26 November 2010)
  72. Biostatistics 666: Analysis of Low Pass Sequence Data‏‎ (23:32, 1 December 2010)
  73. Biostatistics 666: Copy Number Variation‏‎ (21:05, 2 December 2010)
  74. Variant Call Pipeline‏‎ (15:36, 21 December 2010)
  75. Meta Analysis of SNPxEnvironment Interaction‏‎ (12:24, 10 January 2011)
  76. Example‏‎ (15:39, 30 January 2011)
  77. Editing Sequence Analysis Practice 2011/03/10‏‎ (02:14, 10 March 2011)
  78. Sequence Analysis Practice 2011/03/09‏‎ (13:29, 10 March 2011)
  79. METAL GENOMICCONTROL‏‎ (07:34, 25 March 2011)
  80. METAL Command Reference‏‎ (07:36, 25 March 2011)
  81. METAL‏‎ (10:33, 25 March 2011)
  82. Makefile.tool‏‎ (17:20, 28 March 2011)
  83. Garlic‏‎ (15:46, 5 April 2011)
  84. Git Cheat Sheet‏‎ (19:13, 7 July 2011)
  85. Using Git Example‏‎ (17:51, 12 July 2011)
  86. Bar Harbor Statistical Genetics Workshop‏‎ (14:54, 21 July 2011)
  87. Basic Linux Intro‏‎ (15:46, 26 July 2011)
  88. Computer How-Tos‏‎ (10:51, 27 July 2011)
  89. MaCH: 1000 Genomes Imputation Cookbook‏‎ (03:08, 28 July 2011)
  90. Hardy Weinberg equilibrium‏‎ (07:12, 5 August 2011)
  91. LiftRsNumber.py‏‎ (11:33, 10 August 2011)
  92. IMPUTE2‏‎ (16:17, 10 August 2011)
  93. LibStatGen Repository‏‎ (15:24, 23 August 2011)
  94. Biostatistics 615/815 Winter 2011‏‎ (00:10, 6 September 2011)
  95. Sam Library Usage Examples‏‎ (09:07, 7 September 2011)
  96. FastQ Validation Criteria‏‎ (14:01, 7 September 2011)
  97. StatgenTools‏‎ (13:06, 9 September 2011)
  98. How To Use Git‏‎ (16:58, 9 September 2011)
  99. Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium‏‎ (07:33, 12 September 2011)
  100. Better X Sessions from Home (NX)‏‎ (12:51, 8 November 2011)
  101. Biostatistics 666: Rare Variant Burden Tests‏‎ (07:48, 30 November 2011)
  102. Biostatistics 666: Analysis of Copy Number Using Sequence Data‏‎ (09:14, 5 December 2011)
  103. Biostatistics 666: Likelihood Calculations for Large Pedigrees‏‎ (04:48, 7 December 2011)
  104. Installing MinGW & MSYS on Windows‏‎ (12:30, 18 January 2012)
  105. Vpeep‏‎ (11:48, 19 January 2012)
  106. ThunderVCF‏‎ (07:42, 23 January 2012)
  107. Vmatch‏‎ (17:11, 23 January 2012)
  108. Arf‏‎ (18:38, 2 February 2012)
  109. FTEC‏‎ (11:21, 17 February 2012)
  110. BamUtil: indelDiscordance‏‎ (16:10, 23 February 2012)
  111. Pileup‏‎ (15:06, 3 April 2012)
  112. VCF‏‎ (18:10, 18 April 2012)
  113. LibStatGen: ASP‏‎ (11:45, 30 April 2012)
  114. GlfTrio‏‎ (12:45, 1 May 2012)
  115. C++ Library: FASTQ Change Log‏‎ (12:56, 1 May 2012)
  116. C++ Library: general Change Log‏‎ (12:57, 1 May 2012)
  117. StatsTools‏‎ (17:17, 1 June 2012)
  118. LiftMap.py‏‎ (23:18, 18 June 2012)
  119. Bam read count‏‎ (15:29, 14 August 2012)
  120. Biostatistics 615/815 Fall 2011‏‎ (17:35, 31 August 2012)
  121. SNP Call Set Properties‏‎ (19:08, 10 September 2012)
  122. IMPUTE2: 1000 Genomes Imputation Cookbook‏‎ (05:19, 11 September 2012)
  123. Biostatistics 815 Term Project‏‎ (23:35, 19 September 2012)
  124. IGFPipe‏‎ (15:12, 2 November 2012)
  125. AWS Resources‏‎ (13:44, 15 November 2012)
  126. Biostatistics 666: Core Competencies‏‎ (06:56, 5 December 2012)
  127. Biostatistics 615/815: Main Page‏‎ (21:53, 18 December 2012)
  128. LibStatGen: VCF‏‎ (16:09, 23 January 2013)
  129. Mach2dat: Association with MACH output‏‎ (22:12, 5 February 2013)
  130. Vcf2geno‏‎ (17:01, 19 February 2013)
  131. GBR60vc.conf‏‎ (02:05, 25 February 2013)
  132. BAM‏‎ (23:16, 26 February 2013)
  133. BamPileup‏‎ (18:08, 28 February 2013)
  134. Understanding VerifyBamID output‏‎ (16:48, 4 March 2013)
  135. RareMetals‏‎ (22:06, 6 March 2013)
  136. HAPMIX‏‎ (14:05, 13 March 2013)
  137. Polymutt beta‏‎ (12:42, 17 March 2013)
  138. GotCloud: RedHat Package‏‎ (16:31, 18 March 2013)
  139. Rare-metal-worker‏‎ (21:31, 31 March 2013)
  140. MutationFilter‏‎ (01:06, 16 April 2013)
  141. How to use aspera‏‎ (00:56, 9 May 2013)
  142. Amazon Snapshot‏‎ (13:06, 20 May 2013)
  143. Creating a Snapshot on EC2‏‎ (13:12, 20 May 2013)
  144. Trial Enrichment‏‎ (18:28, 21 May 2013)
  145. Goncalo Abecasis: Interview with Christiana Fogg‏‎ (14:56, 7 June 2013)
  146. BAM to FASTQ‏‎ (10:45, 10 June 2013)
  147. Mary Kate Wing‏‎ (14:52, 17 June 2013)
  148. Jennifer Bragg-Gresham‏‎ (10:18, 18 June 2013)
  149. Lars Fritsche‏‎ (13:16, 27 June 2013)
  150. Sara Rashkin‏‎ (13:18, 27 June 2013)
  151. Ben Lerch‏‎ (13:21, 27 June 2013)
  152. Tom Blackwell‏‎ (17:06, 28 June 2013)
  153. SardiNIA project meeting July 15-16, 2013‏‎ (11:46, 8 July 2013)
  154. Goncalo Abecasis‏‎ (01:51, 3 August 2013)
  155. Exome Chip Design‏‎ (07:42, 6 August 2013)
  156. Tutorial: GotCloud UW CMG‏‎ (16:15, 6 August 2013)
  157. GLF‏‎ (11:22, 13 August 2013)
  158. Biostatistics 830: Core Competencies‏‎ (09:27, 4 September 2013)
  159. FamRvTest tutorial‏‎ (14:33, 10 September 2013)
  160. Ligate Minimac‏‎ (15:06, 10 September 2013)
  161. PileupBasedVariantCalling‏‎ (15:52, 10 September 2013)
  162. 830 - Haplotyper::Transpose()‏‎ (14:52, 13 September 2013)
  163. 830 - Haplotyper::SetupPrior()‏‎ (14:56, 13 September 2013)
  164. 830 - Haplotyper::ConditionOnData()‏‎ (14:58, 13 September 2013)
  165. 830 - Haplotyper::RandomSetup()‏‎ (15:56, 13 September 2013)
  166. 830 - MarkovModel::Transpose()‏‎ (14:39, 25 September 2013)
  167. 830 - MarkovModel::Condition()‏‎ (14:40, 25 September 2013)
  168. 830 - MarkovModel::WalkRight()‏‎ (14:45, 25 September 2013)
  169. 830 - MarkovModel::Impute()‏‎ (14:50, 25 September 2013)
  170. 830 - MarkovModel::CountRecombinants()‏‎ (14:54, 25 September 2013)
  171. 830 - MarkovModel::CountErrors()‏‎ (14:57, 25 September 2013)
  172. 830 - MarkovModel::CountErrorsAndRecombinants()‏‎ (15:01, 25 September 2013)
  173. GlfSingle‏‎ (11:34, 26 September 2013)
  174. 830 - Haplotyper::ScoreLeftConditional()‏‎ (13:30, 2 October 2013)
  175. 830 - Haplotyper::SampleHaplotypes()‏‎ (14:10, 2 October 2013)
  176. 830 - Haplotyper::SampleChromosomes()‏‎ (14:11, 2 October 2013)
  177. 830 - Haplotyper::ImputeGenotypes()‏‎ (14:19, 2 October 2013)
  178. 830 - Haplotyper::ScoreLeftConditional() (smart, complicated)‏‎ (14:31, 2 October 2013)
  179. 830 - MINIMAC::main()‏‎ (15:06, 2 October 2013)
  180. 830 - Haplotyper::SummarizeOptions()‏‎ (15:55, 2 October 2013)
  181. 830 - Haplotyper::SampleOneHaplotype()‏‎ (16:03, 2 October 2013)
  182. 830 - Haplotyper::ImputeGenotypes() (internal)‏‎ (16:15, 2 October 2013)
  183. 830 - Haplotyper::ImputeGenotypes() (edge)‏‎ (16:16, 2 October 2013)
  184. Rare Variant Analysis and Meta-Analysis‏‎ (11:13, 3 October 2013)
  185. Scott Vrieze‏‎ (09:16, 4 October 2013)
  186. Mount S3 Volume‏‎ (14:05, 10 October 2013)
  187. 830 - BasicMapper::main()‏‎ (13:29, 28 October 2013)
  188. 830 - MaqIndex::CompareToIndex()‏‎ (13:34, 28 October 2013)
  189. 830 - MaqIndex::BuildIndex()‏‎ (13:38, 28 October 2013)
  190. 830 - MaqIndex::GetWord()‏‎ (13:39, 28 October 2013)
  191. 830 - BestAlignment::MaqAlignment()‏‎ (13:45, 28 October 2013)
  192. 830 - BestAlignment::EvaluateAlignment() (main loop)‏‎ (13:46, 28 October 2013)
  193. 830 - BestAlignment::EvaluateAlignment() (detailed comparison)‏‎ (13:47, 28 October 2013)
  194. 830 - BestAlignment::isNewPosition()‏‎ (13:51, 28 October 2013)
  195. 830 - BestAlignment::ClearPositions()‏‎ (13:53, 28 October 2013)
  196. Biostatistics 830 - Code Snippets‏‎ (13:53, 28 October 2013)
  197. 830 - BestAlignment::IterateCache()‏‎ (13:58, 28 October 2013)
  198. 830 - MaqIndex::LookupWord()‏‎ (16:09, 28 October 2013)
  199. SEQMIX‏‎ (03:07, 4 November 2013)
  200. Code Sample: Generating QQ Plots in R‏‎ (14:14, 12 November 2013)
  201. EMADS‏‎ (23:03, 14 November 2013)
  202. EMADS Primary Analysis Plan‏‎ (23:03, 14 November 2013)
  203. Biostatistics 602: Main Page‏‎ (10:29, 26 November 2013)
  204. BamUtil: asp‏‎ (17:38, 3 January 2014)
  205. BamUtil: dumpAsp‏‎ (17:39, 3 January 2014)
  206. BamUtil: splitChromosome‏‎ (17:43, 3 January 2014)
  207. BamUtil: findCigars‏‎ (18:27, 3 January 2014)
  208. BamUtil: convert‏‎ (18:27, 3 January 2014)
  209. BamUtil: splitBam‏‎ (18:28, 3 January 2014)
  210. Tutorial: EMMAX GotCloud STOM: Lecture 2‏‎ (03:07, 6 January 2014)
  211. Tutorial: EMMAX GotCloud STOM: Lecture 6‏‎ (09:58, 6 January 2014)
  212. Tutorial: EMMAX GotCloud STOM: Lecture 5‏‎ (10:07, 6 January 2014)
  213. Tutorial: EMMAX GotCloud STOM‏‎ (10:56, 6 January 2014)
  214. BamUtil: writeRegion‏‎ (12:30, 6 January 2014)
  215. BamUtil: validate‏‎ (14:05, 6 January 2014)
  216. BamUtil: polishBam‏‎ (14:06, 6 January 2014)
  217. BamUtil: mergeBam‏‎ (14:06, 6 January 2014)
  218. BamUtil: revert‏‎ (14:07, 6 January 2014)
  219. BamUtil: filter‏‎ (14:07, 6 January 2014)
  220. PhoneHome‏‎ (16:24, 6 January 2014)
  221. BamUtil: dumpHeader‏‎ (16:50, 6 January 2014)
  222. BamUtil: diff‏‎ (17:00, 6 January 2014)
  223. BamUtil: readIndexedBam‏‎ (17:48, 6 January 2014)
  224. BamUtil: dumpRefInfo‏‎ (17:54, 6 January 2014)
  225. BamUtil: dumpIndex‏‎ (18:01, 6 January 2014)
  226. BamUtil: readReference‏‎ (18:07, 6 January 2014)
  227. BamUtil: explainFlags‏‎ (19:01, 6 January 2014)
  228. Tutorial: EMMAX GotCloud STOM: Lecture 8‏‎ (02:31, 7 January 2014)
  229. Tutorial: GotCloud‏‎ (12:35, 10 January 2014)
  230. Code Sample: Generating Manhattan Plots in R‏‎ (10:49, 14 January 2014)
  231. UMAKE-glfSingle‏‎ (12:32, 22 January 2014)
  232. Ann Arbor Travel Basics‏‎ (15:16, 25 March 2014)
  233. BamUtil: squeeze‏‎ (11:58, 26 March 2014)
  234. RAREMETALWORKER X‏‎ (19:13, 27 March 2014)
  235. VerifyIDintensity‏‎ (15:34, 24 April 2014)
  236. Polymutt‏‎ (10:12, 27 April 2014)
  237. GotCloud: Source Releases‏‎ (17:34, 15 May 2014)
  238. Analyses of Indels‏‎ (18:12, 15 June 2014)
  239. Sequencing Workshop Analysis of Indels‏‎ (16:47, 16 June 2014)
  240. Introduction to new students‏‎ (21:39, 17 June 2014)
  241. FamRvTest command‏‎ (01:48, 14 July 2014)
  242. Abecasis Group Awards‏‎ (19:01, 23 July 2014)
  243. Sean Caron‏‎ (15:11, 31 July 2014)
  244. Ancestry‏‎ (14:53, 12 August 2014)
  245. FamLDCaller‏‎ (10:05, 18 August 2014)
  246. Biostatistics 830: Fall 2013 Edition‏‎ (13:59, 2 September 2014)
  247. VcfRefGen‏‎ (15:53, 4 September 2014)
  248. Xiaowei Zhan‏‎ (18:02, 4 September 2014)
  249. BamUtil: FAQ‏‎ (13:04, 23 September 2014)
  250. Debuggers‏‎ (14:33, 23 September 2014)
  251. Examples of Read Mapping with Karma and BWA‏‎ (16:50, 23 September 2014)
  252. GotCloud: Reference Files‏‎ (13:19, 6 October 2014)
  253. Creating an AMI on EC2‏‎ (14:54, 14 October 2014)
  254. Configure GotCloud‏‎ (09:39, 16 October 2014)
  255. Amazon Single Node‏‎ (16:51, 16 October 2014)
  256. Understanding QPLOT output‏‎ (10:03, 23 October 2014)
  257. GotCloud: Configuration‏‎ (18:53, 23 October 2014)
  258. GotCloud: Filters‏‎ (10:53, 29 October 2014)
  259. AWS Credentials‏‎ (17:31, 29 October 2014)
  260. GotCloud: AMIs‏‎ (15:56, 30 October 2014)
  261. GotCloud: Amazon Demo‏‎ (12:55, 31 October 2014)
  262. Amazon Storage‏‎ (16:49, 5 November 2014)
  263. StarCluster‏‎ (10:49, 7 November 2014)
  264. SeqShop: June 2014‏‎ (14:21, 13 November 2014)
  265. SeqShop: Aligning Your Own Genome, June 2014‏‎ (14:25, 13 November 2014)
  266. SeqShop: Calling Your Own Genome, June 2014‏‎ (14:30, 13 November 2014)
  267. SeqShop: Friday - Practicing what we learned, June 2014‏‎ (14:31, 13 November 2014)
  268. SeqShop: Ancestry On Your Own Genome, June 2014‏‎ (14:32, 13 November 2014)
  269. SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014‏‎ (14:36, 13 November 2014)
  270. SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014‏‎ (14:37, 13 November 2014)
  271. SeqShop: Analysis of Structural Variation Practical, June 2014‏‎ (14:37, 13 November 2014)
  272. Understanding vcf-summary output‏‎ (22:31, 23 November 2014)
  273. SeqShop: Aligning Your Own Genome, December 2014‏‎ (10:23, 8 December 2014)
  274. SeqShop: Ancestry On Your Own Genome, December 2014‏‎ (12:43, 12 December 2014)
  275. SeqShop: Calling Your Own Genome, December 2014‏‎ (12:16, 15 December 2014)
  276. SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014‏‎ (17:09, 17 December 2014)
  277. SeqShop: Analysis of Structural Variation Practical, December 2014‏‎ (17:09, 17 December 2014)
  278. SeqShop: December 2014‏‎ (12:17, 18 December 2014)
  279. RvTests‏‎ (22:59, 13 January 2015)
  280. Minimac: 1000 Genomes Imputation Cookbook‏‎ (03:40, 28 January 2015)
  281. Minimac Command Reference‏‎ (03:40, 28 January 2015)
  282. M3VCF Files‏‎ (20:35, 29 January 2015)
  283. Minimac3 Imputation Cookbook‏‎ (23:28, 29 January 2015)
  284. Minimac3 Cookbook : Pre-Phasing‏‎ (02:20, 30 January 2015)
  285. Minimac3 Cookbook : Converting Files to VCF‏‎ (23:32, 30 January 2015)
  286. NHLBI Informatics Resource‏‎ (01:04, 31 January 2015)
  287. Class Notes‏‎ (16:44, 4 February 2015)
  288. Screen Commands‏‎ (12:44, 6 February 2015)
  289. GotCloud: GenomeSTRiP Pipeline‏‎ (18:47, 10 February 2015)
  290. GotCloud: Variant Calling Options‏‎ (14:57, 11 February 2015)
  291. RAREFY‏‎ (20:17, 16 February 2015)
  292. Shuang Feng‏‎ (20:29, 16 February 2015)
  293. RAREFY FAQ‏‎ (03:44, 17 February 2015)
  294. RAREFY DOWNLOAD‏‎ (05:08, 17 February 2015)
  295. RAREFY DOCUMENTATION‏‎ (05:08, 17 February 2015)
  296. RAREFY COMMAND‏‎ (05:09, 17 February 2015)
  297. RAREFY TUTORIAL‏‎ (05:10, 17 February 2015)
  298. Dosage convertor‏‎ (01:13, 28 February 2015)
  299. MEAGA‏‎ (21:37, 4 March 2015)
  300. Short Workshops‏‎ (17:05, 9 March 2015)
  301. GotCloud: Alignment Sub-Pipelines‏‎ (21:37, 18 March 2015)
  302. GTDT‏‎ (08:18, 26 March 2015)
  303. GotCloud: Variant Calling Pipeline‏‎ (18:54, 30 March 2015)
  304. SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014‏‎ (19:12, 30 March 2015)
  305. GotCloud: Genetic Reference and Resource Files‏‎ (12:00, 14 May 2015)
  306. GotCloud: Versions‏‎ (12:17, 14 May 2015)
  307. SeqShop: Sequence Mapping and Assembly Practical, December 2014‏‎ (16:35, 15 May 2015)
  308. SeqShop: Aligning Your Own Genome, May 2015‏‎ (11:34, 18 May 2015)
  309. TrioCaller‏‎ (18:01, 19 May 2015)
  310. SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015‏‎ (11:22, 20 May 2015)
  311. SeqShop: Association Analysis, May 2015‏‎ (14:15, 21 May 2015)
  312. SeqShop: Ancestry On Your Own Genome, May 2015‏‎ (14:57, 21 May 2015)
  313. SeqShop: May 2015‏‎ (10:40, 22 May 2015)
  314. SeqShop: Calling Your Own Genome, May 2015‏‎ (12:10, 22 May 2015)
  315. GotCloud: FAQs‏‎ (10:54, 23 June 2015)
  316. RareMETALS2‏‎ (15:11, 29 June 2015)
  317. Biostatistics 501: Main Page‏‎ (16:10, 10 July 2015)
  318. LiftOver‏‎ (18:33, 15 July 2015)
  319. Genotype Likelihood based Hardy-Weinberg Test‏‎ (15:52, 3 August 2015)
  320. Genotype Likelihood based Inbreeding Coefficient‏‎ (15:53, 3 August 2015)
  321. Genotype Likelihood based Allele Frequency‏‎ (15:54, 3 August 2015)
  322. Dajiang Liu‏‎ (14:30, 13 August 2015)
  323. SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015‏‎ (18:35, 19 August 2015)
  324. SeqShop: Analysis of Structural Variation Practical, May 2015‏‎ (15:56, 25 August 2015)
  325. GotCloud: Amazon‏‎ (13:55, 31 August 2015)
  326. GotCloud: Creating a New Pipeline‏‎ (14:55, 31 August 2015)
  327. Git FAQs‏‎ (18:50, 8 September 2015)
  328. Minimac3 Cookbook : Chromosome X Imputation‏‎ (13:19, 10 September 2015)
  329. Minimac3 Examples‏‎ (02:15, 11 September 2015)
  330. SAM‏‎ (16:10, 11 September 2015)
  331. M3vcftools Usage‏‎ (22:04, 18 October 2015)
  332. Minimac3 Info (Older Version)‏‎ (17:51, 19 October 2015)
  333. VcfCooker‏‎ (01:51, 31 October 2015)
  334. Releasing GotCloud‏‎ (22:17, 6 November 2015)
  335. GotCloud: Binary Releases‏‎ (23:29, 7 January 2016)
  336. Using Gotcloud on Flux‏‎ (11:51, 12 January 2016)
  337. Alan Kwong‏‎ (23:45, 22 January 2016)
  338. SeqShop: Sequence Mapping and Assembly Practical, May 2015‏‎ (03:00, 28 January 2016)
  339. Imputation Server: Example‏‎ (11:14, 28 January 2016)
  340. GotCloud: Alignment Pipeline‏‎ (18:39, 28 January 2016)
  341. Tandem Repeat Concepts‏‎ (19:17, 25 February 2016)
  342. Variant classification‏‎ (21:44, 25 February 2016)
  343. BamUtil: bam2FastQ‏‎ (23:53, 5 March 2016)
  344. BamUtil: clipOverlap‏‎ (00:01, 6 March 2016)
  345. BamUtil: gapInfo‏‎ (01:45, 6 March 2016)
  346. Genezoom‏‎ (11:40, 16 March 2016)
  347. Rvtests‏‎ (00:31, 12 May 2016)
  348. Minimac3 Usage‏‎ (19:32, 6 June 2016)
  349. Minimac3 - Full List of Options‏‎ (19:34, 6 June 2016)
  350. Minimac3 ChangeLog‏‎ (22:24, 6 June 2016)
  351. Tutorial: Low Pass Sequence Analysis Answers‏‎ (04:10, 23 June 2016)
  352. M3vcftools‏‎ (21:57, 10 July 2016)
  353. Sayantan Das‏‎ (01:05, 17 July 2016)
  354. Variant Normalization‏‎ (09:55, 1 August 2016)
  355. Idriver‏‎ (13:36, 6 September 2016)
  356. Bayesdenovo‏‎ (10:22, 26 October 2016)
  357. Polymutt2‏‎ (23:54, 10 November 2016)
  358. GREGOR‏‎ (17:39, 15 November 2016)
  359. Biostatistics 866: Core Competencies‏‎ (19:08, 1 December 2016)
  360. Minimac4 - Full List of Options‏‎ (21:28, 1 December 2016)
  361. Biostatistics 830: Main Page‏‎ (03:43, 5 January 2017)
  362. 830 - MarkovModel::WalkLeft()‏‎ (09:24, 19 January 2017)
  363. Minimac: Tutorial‏‎ (12:34, 25 January 2017)
  364. SeqShop: Estimates of Genetic Ancestry Practical, May 2015‏‎ (09:57, 2 February 2017)
  365. EMMAX‏‎ (09:58, 2 February 2017)
  366. ExomePicks‏‎ (10:01, 2 February 2017)
  367. ChunkChromosome‏‎ (10:02, 2 February 2017)
  368. EPACTS for DIAGRAM‏‎ (10:05, 2 February 2017)
  369. SeqShop: Estimates of Genetic Ancestry Practical, June 2014‏‎ (10:23, 2 February 2017)
  370. SeqShop: Estimates of Genetic Ancestry Practical, December 2014‏‎ (10:24, 2 February 2017)
  371. SeqShop: Genetic Association Analysis Practical, June 2014‏‎ (10:27, 2 February 2017)
  372. SeqShop: Genetic Association Analysis Practical, December 2014‏‎ (10:27, 2 February 2017)
  373. Test EPACTS for DIAGRAM‏‎ (10:28, 2 February 2017)
  374. SAM/BAM Convert Sequence‏‎ (10:37, 2 February 2017)
  375. C++ Class: InputFile‏‎ (10:47, 2 February 2017)
  376. LibStatGen: FASTQ‏‎ (10:49, 2 February 2017)
  377. LibStatGen: general‏‎ (10:51, 2 February 2017)
  378. LibStatGen: BAM‏‎ (10:55, 2 February 2017)
  379. C++ Class: FastQFile‏‎ (10:58, 2 February 2017)
  380. FastQValidator‏‎ (11:00, 2 February 2017)
  381. LibStatGen: GLF‏‎ (11:01, 2 February 2017)
  382. C++ Class: SamRecord‏‎ (11:02, 2 February 2017)
  383. C++ Class: SamFile‏‎ (11:03, 2 February 2017)
  384. C++ Class: SamFileHeader‏‎ (11:05, 2 February 2017)
  385. SeqShop: Sequence Mapping and Assembly Practical, June 2014‏‎ (11:07, 2 February 2017)
  386. Karma‏‎ (11:10, 2 February 2017)
  387. BamGenotypeCheck‏‎ (11:11, 2 February 2017)
  388. RareSimu‏‎ (11:11, 2 February 2017)
  389. TrioCaller:Archive‏‎ (11:14, 2 February 2017)
  390. MaCH FAQ‏‎ (11:22, 2 February 2017)
  391. Mach DAC‏‎ (11:24, 2 February 2017)
  392. MaCH: Input Files‏‎ (11:31, 2 February 2017)
  393. SplitPed‏‎ (11:33, 2 February 2017)
  394. SplitRef‏‎ (11:34, 2 February 2017)
  395. Rare variant tests‏‎ (11:35, 2 February 2017)
  396. CheckVCF.py‏‎ (11:36, 2 February 2017)
  397. QPLOT‏‎ (11:42, 2 February 2017)
  398. LASER‏‎ (11:51, 2 February 2017)
  399. UMAKE‏‎ (11:53, 2 February 2017)
  400. TabAnno‏‎ (11:57, 2 February 2017)
  401. VcfCodingSnps‏‎ (11:58, 2 February 2017)
  402. C++ Class: CigarRoller‏‎ (12:00, 2 February 2017)
  403. BAM Review Action Items‏‎ (12:01, 2 February 2017)
  404. MaCH: machX‏‎ (12:02, 2 February 2017)
  405. CalcMatch‏‎ (12:03, 2 February 2017)
  406. Famrvtest‏‎ (10:34, 21 February 2017)
  407. Thunder‏‎ (12:08, 21 February 2017)
  408. Biostatistics 866: Main Page‏‎ (07:21, 18 April 2017)
  409. ContaminationDetection‏‎ (15:53, 3 May 2017)
  410. RareMETALS‏‎ (10:18, 18 May 2017)
  411. Minimac Diagnostics‏‎ (11:35, 8 June 2017)
  412. CSG Tech Talks‏‎ (13:56, 23 August 2017)
  413. BamUtil: stats‏‎ (15:59, 24 August 2017)
  414. VerifyBamID‏‎ (15:29, 9 September 2017)
  415. Biostatistics 666: Hardy-Weinberg Equilibrium‏‎ (08:30, 11 September 2017)
  416. Biostatistics 666: Contemporary Human Genetics‏‎ (08:32, 11 September 2017)
  417. Biostatistics 666: Linkage Disequilibrium‏‎ (07:53, 13 September 2017)
  418. Biostatistics 666: Introduction to the Coalescent‏‎ (05:55, 18 September 2017)
  419. Biostatistics 666: Modeling Variation in the Coalescent‏‎ (08:26, 25 September 2017)
  420. Biostatistics 666: Modeling Recombination and Migration in the Coalescent‏‎ (06:20, 2 October 2017)
  421. Biostatistics 666: Maximum Likelihood Allele Frequency Estimation‏‎ (06:52, 2 October 2017)
  422. Biostatistics 666: Introduction to the E-M Algorithm‏‎ (07:12, 4 October 2017)
  423. Biostatistics 666: Haplotype Estimation‏‎ (08:37, 9 October 2017)
  424. Relationship between Ploidy, Alleles and Genotypes‏‎ (21:07, 18 October 2017)
  425. Biostatistics 666: Advanced Haplotype Estimation‏‎ (08:16, 23 October 2017)
  426. Biostatistics 666: Power of Genomewide Association Studies‏‎ (04:28, 1 November 2017)
  427. BamUtil: trimBam‏‎ (23:28, 12 November 2017)
  428. LibStatGen Download‏‎ (00:04, 13 November 2017)
  429. LibStatGen Troubleshooting‏‎ (00:20, 13 November 2017)
  430. Biostatistics 666: Variance Component Analyses‏‎ (09:38, 13 November 2017)
  431. Biostatistics 666: Linkage Analysis in Sibling Pairs‏‎ (09:30, 15 November 2017)
  432. Biostatistics 666: Genotype Imputation‏‎ (09:10, 20 November 2017)
  433. Biostatistics 666: Whole Genome Sequencing‏‎ (03:37, 4 December 2017)
  434. Biostatistics 666: Introduction to De Novo Assembly‏‎ (03:38, 4 December 2017)
  435. Biostatistics 666: Main Page‏‎ (10:16, 10 December 2017)
  436. METAL Documentation‏‎ (15:52, 22 December 2017)
  437. Zlib‏‎ (16:58, 22 December 2017)
  438. Minimac2‏‎ (12:53, 9 March 2018)
  439. Minimac‏‎ (12:53, 9 March 2018)
  440. MetaMinimac‏‎ (14:46, 9 March 2018)
  441. RAREMETALWORKER command reference‏‎ (17:47, 16 March 2018)
  442. RAREMETALWORKER METHOD‏‎ (17:49, 16 March 2018)
  443. RAREMETALWORKER SPECIAL TOPICS‏‎ (17:50, 16 March 2018)
  444. Tutorial: RAREMETAL‏‎ (17:51, 16 March 2018)
  445. RAREMETAL‏‎ (17:52, 16 March 2018)
  446. RAREMETAL Command Reference‏‎ (17:53, 16 March 2018)
  447. RAREMETAL FAQ‏‎ (11:46, 20 March 2018)
  448. Savvy C++ Library‏‎ (15:50, 19 April 2018)
  449. SavR‏‎ (16:19, 19 April 2018)
  450. SAV Command Line Interface‏‎ (09:34, 22 May 2018)
  451. SAV File Format‏‎ (10:03, 22 May 2018)
  452. BAFRegress‏‎ (17:09, 18 July 2018)
  453. SardiNIA‏‎ (10:24, 8 September 2018)
  454. TOPMed Site Visit 2018‏‎ (10:14, 28 September 2018)
  455. Minimac3 Info File‏‎ (17:48, 14 December 2018)
  456. DosageConvertor‏‎ (14:01, 18 January 2019)
  457. EPACTS‏‎ (08:03, 19 February 2019)
  458. RAREMETAL DOWNLOAD & BUILD‏‎ (12:44, 14 March 2019)
  459. RAREMETAL Change Log‏‎ (12:50, 14 March 2019)
  460. Raremetal Incoming updates‏‎ (12:52, 14 March 2019)
  461. BamUtil: dedup‏‎ (22:31, 8 April 2019)
  462. VICES‏‎ (09:59, 15 April 2019)
  463. BamUtil: recab‏‎ (23:01, 19 April 2019)
  464. RAREMETAL Documentation‏‎ (13:22, 20 May 2019)
  465. RAREMETAL METHOD‏‎ (13:28, 20 May 2019)
  466. Minimac4 Documentation‏‎ (23:17, 19 July 2019)
  467. Summary Statistics Files Specification for RAREMETAL and rvtests‏‎ (11:39, 29 August 2019)
  468. Tutorial: Low Pass Sequence Analysis‏‎ (03:59, 17 September 2019)
  469. RAREMETALWORKER‏‎ (13:34, 20 November 2019)
  470. LocusZoom‏‎ (13:29, 28 October 2020)
  471. Vt‏‎ (04:36, 4 May 2021)
  472. Make file tutorial‏‎ (21:00, 14 July 2021)
  473. BamUtil‏‎ (17:14, 11 September 2021)
  474. SAM/BAM Classes FAQs‏‎ (17:20, 11 September 2021)
  475. Software‏‎ (17:20, 11 September 2021)
  476. C++ Library: libStatGen‏‎ (17:21, 11 September 2021)
  477. Samtools-hybrid‏‎ (17:22, 11 September 2021)
  478. GotCloud‏‎ (17:23, 11 September 2021)
  479. Regions of high linkage disequilibrium (LD)‏‎ (22:38, 10 October 2021)
  480. LocusZoom Standalone‏‎ (18:03, 18 November 2021)
  481. Minimac3‏‎ (15:40, 18 October 2022)
  482. Triodenovo‏‎ (18:19, 11 January 2023)
  483. Main Page‏‎ (16:06, 23 March 2023)
  484. Abecasis Lab‏‎ (17:03, 23 March 2023)
  485. Minimac4‏‎ (11:40, 14 June 2023)

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