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1. Main Page‏‎ (1,250,977 views)
2. SAM‏‎ (407,349 views)
3. Minimac‏‎ (390,738 views)
4. Vt‏‎ (381,928 views)
5. EPACTS‏‎ (298,542 views)
6. Abecasis Lab‏‎ (268,579 views)
7. METAL Documentation‏‎ (252,187 views)
8. Biostatistics 666: Main Page‏‎ (226,722 views)
9. BamUtil‏‎ (224,999 views)
10. LiftOver‏‎ (223,194 views)
11. RAREMETALWORKER‏‎ (215,779 views)
12. VerifyBamID‏‎ (212,399 views)
13. Polymutt‏‎ (201,519 views)
14. Installing MinGW & MSYS on Windows‏‎ (201,206 views)
15. LocusZoom Standalone‏‎ (196,562 views)
16. Variant Normalization‏‎ (195,683 views)
17. Minimac3‏‎ (181,638 views)
18. RAREMETAL Documentation‏‎ (179,620 views)
19. BAM‏‎ (178,206 views)
20. GotCloud‏‎ (147,258 views)
21. FastQValidator‏‎ (140,989 views)
22. Biostatistics 602: Main Page‏‎ (139,660 views)
23. IMPUTE2: 1000 Genomes Imputation Cookbook‏‎ (125,976 views)
24. Exome Chip Design‏‎ (122,334 views)
25. QPLOT‏‎ (121,345 views)
26. LocusZoom‏‎ (119,287 views)
27. MaCH‏‎ (117,384 views)
28. Minimac: 1000 Genomes Imputation Cookbook‏‎ (112,614 views)
29. Biostatistics 615/815: Main Page‏‎ (112,095 views)
30. EMADS‏‎ (101,758 views)
31. Code Sample: Generating Manhattan Plots in R‏‎ (101,266 views)
32. VcfCodingSnps‏‎ (100,436 views)
33. DosageConvertor‏‎ (100,299 views)
34. Biostatistics 830: Main Page‏‎ (96,425 views)
35. Minimac4‏‎ (95,638 views)
36. Tutorial: Low Pass Sequence Analysis‏‎ (94,759 views)
37. Tutorial: GotCloud‏‎ (93,074 views)
38. Software‏‎ (92,522 views)
39. EMMAX‏‎ (89,092 views)
40. Variant classification‏‎ (88,901 views)
41. RAREMETAL‏‎ (88,431 views)
42. Mapping Quality Scores‏‎ (85,138 views)
43. METAL‏‎ (84,254 views)
44. RareMETALS‏‎ (83,869 views)
45. Famrvtest‏‎ (83,257 views)
46. SeqShop: Calling Your Own Genome, December 2014‏‎ (82,069 views)
47. Minimac2‏‎ (81,076 views)
48. METAL Quick Start‏‎ (80,072 views)
49. Triodenovo‏‎ (77,556 views)
50. MaCH FAQ‏‎ (76,011 views)
51. TrioCaller‏‎ (74,109 views)
52. C++ Library: libStatGen‏‎ (72,289 views)
53. LASER‏‎ (71,955 views)
54. SardiNIA‏‎ (71,741 views)
55. UMAKE‏‎ (69,807 views)
56. Minimac3 Imputation Cookbook‏‎ (66,282 views)
57. Biostatistics 866: Main Page‏‎ (63,512 views)
58. GREGOR‏‎ (63,313 views)
59. RAREMETAL DOWNLOAD & BUILD‏‎ (62,110 views)
60. Minimac3 Info File‏‎ (62,021 views)
61. EMADS Primary Analysis Plan‏‎ (61,424 views)
62. SNP Call Set Properties‏‎ (59,641 views)
63. Code Sample: Generating QQ Plots in R‏‎ (58,145 views)
64. Thunder‏‎ (57,033 views)
65. GotCloud: Variant Calling Pipeline‏‎ (56,455 views)
66. SeqShop: Calling Your Own Genome, May 2015‏‎ (56,448 views)
67. EPACTS for DIAGRAM‏‎ (55,930 views)
68. SEQMIX‏‎ (54,973 views)
69. RAREMETALWORKER METHOD‏‎ (54,108 views)
70. LibStatGen: BAM‏‎ (53,733 views)
71. GotCloud: Binary Releases‏‎ (53,186 views)
72. BamUtil: trimBam‏‎ (52,784 views)
73. BamUtil: stats‏‎ (52,774 views)
74. BamUtil: bam2FastQ‏‎ (52,689 views)
75. BamUtil: validate‏‎ (52,657 views)
76. Rvtests‏‎ (50,330 views)
77. BamUtil: dedup‏‎ (50,051 views)
78. Biostatistics 615/815 Fall 2011‏‎ (49,778 views)
79. Tutorial: RAREMETAL‏‎ (48,987 views)
80. SeqShop: Analysis of Structural Variation Practical, June 2014‏‎ (48,603 views)
81. LibStatGen: FASTQ‏‎ (47,881 views)
82. RvTests‏‎ (47,366 views)
83. LibStatGen Download‏‎ (46,349 views)
84. Generic Exome Analysis Plan‏‎ (46,286 views)
85. SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014‏‎ (44,979 views)
86. RAREMETAL METHOD‏‎ (44,264 views)
87. GlfMultiples‏‎ (44,221 views)
88. FTEC‏‎ (44,136 views)
89. GotCloud: Alignment Pipeline‏‎ (44,045 views)
90. SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014‏‎ (42,424 views)
91. BamUtil: clipOverlap‏‎ (42,331 views)
92. Short Workshops‏‎ (42,130 views)
93. SeqShop: Analysis of Structural Variation Practical, December 2014‏‎ (41,261 views)
94. VcfCooker‏‎ (39,752 views)
95. Minimac3 Usage‏‎ (39,246 views)
96. Creating an AMI on EC2‏‎ (37,764 views)
97. RareMETALS2‏‎ (37,376 views)
98. Relationship between Ploidy, Alleles and Genotypes‏‎ (36,853 views)
99. Bam read count‏‎ (36,534 views)
100. GotCloud: Genetic Reference and Resource Files‏‎ (36,518 views)
101. Rare variant tests‏‎ (36,071 views)
102. Arf‏‎ (35,811 views)
103. ExomePicks‏‎ (35,805 views)
104. SeqShop: Estimates of Genetic Ancestry Practical, December 2014‏‎ (35,773 views)
105. SeqShop: Sequence Mapping and Assembly Practical, June 2014‏‎ (35,753 views)
106. SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015‏‎ (35,421 views)
107. BamUtil: writeRegion‏‎ (35,150 views)
108. RAREMETALWORKER command reference‏‎ (34,736 views)
109. SeqShop: Sequence Mapping and Assembly Practical, December 2014‏‎ (34,646 views)
110. BamUtil: convert‏‎ (34,461 views)
111. Karma‏‎ (34,137 views)
112. SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014‏‎ (33,980 views)
113. GlfSingle‏‎ (33,690 views)
114. MEAGA‏‎ (33,551 views)
115. BamUtil: diff‏‎ (33,335 views)
116. BamUtil: filter‏‎ (32,565 views)
117. SeqShop: May 2015‏‎ (32,449 views)
118. METAL Command Reference‏‎ (32,046 views)
119. GTDT‏‎ (32,031 views)
120. SeqShop: Sequence Mapping and Assembly Practical, May 2015‏‎ (31,781 views)
121. SeqShop: Estimates of Genetic Ancestry Practical, June 2014‏‎ (31,286 views)
122. StarCluster‏‎ (31,230 views)
123. GotCloud: Alignment Sub-Pipelines‏‎ (30,423 views)
124. BamUtil: recab‏‎ (30,294 views)
125. Shuang Feng‏‎ (29,798 views)
126. MaCH: 1000 Genomes Imputation Cookbook‏‎ (29,649 views)
127. BamGenotypeCheck‏‎ (29,378 views)
128. RAREFY COMMAND‏‎ (28,729 views)
129. BAFRegress‏‎ (28,541 views)
130. ChunkChromosome‏‎ (28,244 views)
131. Amazon Snapshot‏‎ (28,061 views)
132. GLF‏‎ (27,284 views)
133. Polymutt2‏‎ (27,215 views)
134. Abecasis Group Awards‏‎ (27,037 views)
135. RAREFY‏‎ (26,690 views)
136. Minimac: Tutorial‏‎ (26,474 views)
137. SeqShop: Analysis of Structural Variation Practical, May 2015‏‎ (26,362 views)
138. Releasing GotCloud‏‎ (26,340 views)
139. GotCloud: Versions‏‎ (26,024 views)
140. SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015‏‎ (25,876 views)
141. Rare Variant Analysis and Meta-Analysis‏‎ (25,295 views)
142. SeqShop: December 2014‏‎ (25,121 views)
143. Bar Harbor Statistical Genetics Workshop‏‎ (24,988 views)
144. SeqShop: Ancestry On Your Own Genome, December 2014‏‎ (24,954 views)
145. Evaluating a Read Mapper on Simulated Data‏‎ (24,719 views)
146. C++ Class: SamFile‏‎ (24,686 views)
147. Class Notes‏‎ (24,554 views)
148. SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014‏‎ (24,182 views)
149. CSG Tech Talks‏‎ (24,089 views)
150. BamUtil: mergeBam‏‎ (24,086 views)
151. How To Use Git‏‎ (23,862 views)
152. BamUtil: polishBam‏‎ (23,391 views)
153. SeqShop: Genetic Association Analysis Practical, December 2014‏‎ (23,249 views)
154. SAM Validation Criteria‏‎ (23,212 views)
155. Regions of high linkage disequilibrium (LD)‏‎ (23,202 views)
156. Using Git Example‏‎ (22,641 views)
157. Vmatch‏‎ (22,498 views)
158. RAREMETAL FAQ‏‎ (22,298 views)
159. GotCloud: FAQs‏‎ (21,888 views)
160. RAREMETAL Change Log‏‎ (21,809 views)
161. Base Caller Summaries‏‎ (21,662 views)
162. RAREFY DOCUMENTATION‏‎ (21,654 views)
163. Karma-colorspace‏‎ (21,255 views)
164. Creating a Snapshot on EC2‏‎ (21,212 views)
165. Minimac3 Cookbook : Converting Files to VCF‏‎ (21,077 views)
166. Power Calculations: Quantitative Traits‏‎ (20,888 views)
167. BamUtil: splitBam‏‎ (20,551 views)
168. Tutorial: GotCloud UW CMG‏‎ (20,466 views)
169. Biostatistics 830 - Code Snippets‏‎ (20,244 views)
170. BAM Review Action Items‏‎ (20,194 views)
171. Minimac Command Reference‏‎ (20,062 views)
172. SeqShop: Aligning Your Own Genome, December 2014‏‎ (19,970 views)
173. Verifying Sample Identities - Implementation‏‎ (19,619 views)
174. GotCloud: GenomeSTRiP Pipeline‏‎ (19,372 views)
175. Minimac4 Documentation‏‎ (19,209 views)
176. Minimac3 ChangeLog‏‎ (19,199 views)
177. Make file tutorial‏‎ (19,159 views)
178. SeqShop: Ancestry On Your Own Genome, May 2015‏‎ (19,129 views)
179. Git FAQs‏‎ (18,993 views)
180. New Fugue‏‎ (18,988 views)
181. SeqShop: June 2014‏‎ (18,970 views)
182. METAL FAQ‏‎ (18,849 views)
183. Genezoom‏‎ (18,610 views)
184. RAREMETAL Command Reference‏‎ (18,542 views)
185. Indel‏‎ (18,513 views)
186. Minimac3 Cookbook : Chromosome X Imputation‏‎ (18,055 views)
187. GotCloud: Creating a New Pipeline‏‎ (17,953 views)
188. Sequence Analysis Practice 2011/03/09‏‎ (17,908 views)
189. Introduction to new students‏‎ (17,893 views)
190. Goncalo Abecasis‏‎ (17,511 views)
191. LibStatGen: VCF‏‎ (17,491 views)
192. Minimac3 Examples‏‎ (17,403 views)
193. Mach2dat: Association with MACH output‏‎ (17,399 views)
194. Amazon Storage‏‎ (17,385 views)
195. SeqShop: Genetic Association Analysis Practical, June 2014‏‎ (17,349 views)
196. Biostatistics 666: Rare Variant Burden Tests‏‎ (17,177 views)
197. GlfTrio‏‎ (17,073 views)
198. Tutorial: EMMAX GotCloud STOM‏‎ (17,063 views)
199. VerifyIDintensity‏‎ (16,957 views)
200. GotCloud: Amazon Demo‏‎ (16,863 views)
201. Summary Statistics Files Specification for RAREMETAL and rvtests‏‎ (16,745 views)
202. Debuggers‏‎ (16,473 views)
203. Basic Linux Intro‏‎ (16,322 views)
204. VICES‏‎ (16,130 views)
205. LibStatGen Troubleshooting‏‎ (16,111 views)
206. NHLBI Informatics Resource‏‎ (15,931 views)
207. Sean Caron‏‎ (15,763 views)
208. MaCH: Input Files‏‎ (15,598 views)
209. Understanding vcf-summary output‏‎ (15,393 views)
210. C++ Class: CigarRoller‏‎ (15,248 views)
211. LibStatGen: ASP‏‎ (15,134 views)
212. Examples of Read Mapping with Karma and BWA‏‎ (15,030 views)
213. M3VCF Files‏‎ (14,996 views)
214. TabAnno‏‎ (14,882 views)
215. MaCH: machX‏‎ (14,821 views)
216. CalcMatch‏‎ (14,620 views)
217. RAREFY DOWNLOAD‏‎ (14,569 views)
218. SplitPed‏‎ (14,526 views)
219. RelativeFinder‏‎ (14,412 views)
220. RAREMETALWORKER SPECIAL TOPICS‏‎ (14,345 views)
221. Dajiang Liu‏‎ (14,296 views)
222. BamUtil: splitChromosome‏‎ (14,048 views)
223. Computer How-Tos‏‎ (13,990 views)
224. Mach DAC‏‎ (13,921 views)
225. GotCloud: Source Releases‏‎ (13,909 views)
226. 1000 Genomes Project Pilot 1 SNP Calling‏‎ (13,906 views)
227. Understanding VerifyBamID output‏‎ (13,841 views)
228. BamUtil: squeeze‏‎ (13,808 views)
229. LibStatGen: general‏‎ (13,773 views)
230. Haploxt‏‎ (13,612 views)
231. Tutorial: Low Pass Sequence Analysis Answers‏‎ (13,453 views)
232. RAREFY TUTORIAL‏‎ (13,370 views)
233. Stouffer Method for Meta-Analysis‏‎ (13,277 views)
234. ContaminationDetection‏‎ (13,274 views)
235. GotCloud: Variant Calling Options‏‎ (13,214 views)
236. C++ Class: SamFileHeader‏‎ (13,055 views)
237. Samtools-hybrid‏‎ (13,043 views)
238. Phred scale‏‎ (13,025 views)
239. LiftMap.py‏‎ (12,966 views)
240. CheckVCF.py‏‎ (12,917 views)
241. Pileup‏‎ (12,751 views)
242. Biostatistics 666: Linkage Disequilibrium‏‎ (12,743 views)
243. BamUtil: revert‏‎ (12,560 views)
244. Genotype Likelihood based Allele Frequency‏‎ (12,478 views)
245. MutationFilter‏‎ (12,365 views)
246. Minimac3 - Full List of Options‏‎ (12,360 views)
247. Test EPACTS for DIAGRAM‏‎ (12,346 views)
248. FastQ Validation Criteria‏‎ (12,271 views)
249. Raremetal Incoming updates‏‎ (12,258 views)
250. Minimac3 Cookbook : Pre-Phasing‏‎ (12,027 views)
251. Analyses of Indels‏‎ (12,014 views)
252. Genotype Likelihood Based Allele Balance‏‎ (12,008 views)
253. Better X Sessions from Home (NX)‏‎ (11,914 views)
254. Goncalo Abecasis: Interview with Christiana Fogg‏‎ (11,830 views)
255. SeqShop: Association Analysis, May 2015‏‎ (11,761 views)
256. BamUtil: dumpAsp‏‎ (11,731 views)
257. BamUtil: asp‏‎ (11,731 views)
258. Minimac Diagnostics‏‎ (11,724 views)
259. M3vcftools Usage‏‎ (11,674 views)
260. Ligate Minimac‏‎ (11,654 views)
261. C++ Class: FastQFile‏‎ (11,646 views)
262. LiftRsNumber.py‏‎ (11,609 views)
263. LibStatGen Repository‏‎ (11,584 views)
264. BamUtil: gapInfo‏‎ (11,571 views)
265. PedScript‏‎ (11,527 views)
266. Biostatistics 666: Hardy-Weinberg Equilibrium‏‎ (11,378 views)
267. SAV File Format‏‎ (11,068 views)
268. Sam Library Usage Examples‏‎ (10,995 views)
269. METAL Glucose Example Script‏‎ (10,877 views)
270. FamRvTest command‏‎ (10,841 views)
271. BamUtil: findCigars‏‎ (10,804 views)
272. Merlin‏‎ (10,701 views)
273. Biostatistics 666: Modeling Recombination and Migration in the Coalescent‏‎ (10,578 views)
274. FASTA‏‎ (10,486 views)
275. BamUtil: FAQ‏‎ (10,407 views)
276. Minimac3 Info (Older Version)‏‎ (10,304 views)
277. Biostatistics 666: Introductory Lecture‏‎ (10,297 views)
278. Amazon Single Node‏‎ (10,259 views)
279. Biostatistics 666: Whole Genome Sequencing‏‎ (10,197 views)
280. Biostatistics 666: Haplotype Estimation‏‎ (10,176 views)
281. C++ Class: InputFile‏‎ (10,159 views)
282. Sequencing Workshop Analysis of Indels‏‎ (10,132 views)
283. GotCloud: Amazon‏‎ (10,097 views)
284. Idriver‏‎ (10,024 views)
285. Sayantan Das‏‎ (9,986 views)
286. C++ Library: general Change Log‏‎ (9,972 views)
287. Mount S3 Volume‏‎ (9,922 views)
288. Biostatistics 666: Linkage Analysis in Sibling Pairs‏‎ (9,707 views)
289. Biostatistics 615/815 Winter 2011‏‎ (9,701 views)
290. Fst‏‎ (9,694 views)
291. Biostatistics 666: Maximum Likelihood Allele Frequency Estimation‏‎ (9,682 views)
292. BamUtil: dumpHeader‏‎ (9,619 views)
293. C++ Class: SamRecord‏‎ (9,559 views)
294. Alan Kwong‏‎ (9,558 views)
295. Scott Vrieze‏‎ (9,520 views)
296. Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium‏‎ (9,467 views)
297. VcfRefGen‏‎ (9,464 views)
298. Bayesdenovo‏‎ (9,380 views)
299. M3vcftools‏‎ (9,328 views)
300. PhoneHome‏‎ (9,252 views)
301. BaseQualityCheck‏‎ (9,145 views)
302. Screen Commands‏‎ (9,145 views)
303. Biostatistics 666: Introduction to the E-M Algorithm‏‎ (9,119 views)
304. Biostatistics 666: Introduction to the Coalescent‏‎ (9,101 views)
305. VCF‏‎ (9,074 views)
306. SAM/BAM Classes FAQs‏‎ (9,049 views)
307. Zlib‏‎ (8,960 views)
308. BamUtil: dumpRefInfo‏‎ (8,951 views)
309. MaCH Options‏‎ (8,750 views)
310. StatgenTools‏‎ (8,681 views)
311. Meta Analysis of SNPxEnvironment Interaction‏‎ (8,643 views)
312. LibStatGen: GLF‏‎ (8,627 views)
313. C++ Library: FASTQ Change Log‏‎ (8,620 views)
314. SeqShop: Estimates of Genetic Ancestry Practical, May 2015‏‎ (8,575 views)
315. Biostatistics 666: Introduction to De Novo Assembly‏‎ (8,497 views)
316. Gzip‏‎ (8,463 views)
317. Genotype Likelihood based Inbreeding Coefficient‏‎ (8,461 views)
318. FamLDCaller‏‎ (8,430 views)
319. Configure GotCloud‏‎ (8,370 views)
320. Tom Blackwell‏‎ (8,344 views)
321. MappabilityScores‏‎ (8,307 views)
322. BamUtil: indelDiscordance‏‎ (8,280 views)
323. BamUtil: dumpIndex‏‎ (8,256 views)
324. Biostatistics 666: Genotype Imputation‏‎ (8,152 views)
325. Lars Fritsche‏‎ (8,109 views)
326. Jennifer Bragg-Gresham‏‎ (8,069 views)
327. Using Gotcloud on Flux‏‎ (7,976 views)
328. GlfMerge‏‎ (7,959 views)
329. GWAS‏‎ (7,921 views)
330. Biostatistics 666: Haplotype Association Tests‏‎ (7,902 views)
331. Biostatistics 666: Power of Genomewide Association Studies‏‎ (7,852 views)
332. Biostatistics 666: Advanced Coalescent, Changing Population Size‏‎ (7,776 views)
333. Tutorial: EMMAX GotCloud STOM: Lecture 8‏‎ (7,716 views)
334. Biostatistics 666: Variance Component Analyses‏‎ (7,688 views)
335. BamUtil: readReference‏‎ (7,665 views)
336. Biostatistics 666: Association Tests in Structured Populations‏‎ (7,619 views)
337. Biostatistics 666: Modeling Variation in the Coalescent‏‎ (7,568 views)
338. Biostatistics 501: Main Page‏‎ (7,422 views)
339. Xiaowei Zhan‏‎ (7,414 views)
340. Vpeep‏‎ (7,398 views)
341. Biostatistics 666: Core Competencies‏‎ (7,311 views)
342. StatsTools‏‎ (7,263 views)
343. Variant Call Pipeline‏‎ (7,178 views)
344. METAL GENOMICCONTROL‏‎ (7,110 views)
345. METAL CUSTOMVARIABLE‏‎ (7,104 views)
346. Genotype Likelihood based Hardy-Weinberg Test‏‎ (7,072 views)
347. BamUtil: readIndexedBam‏‎ (7,037 views)
348. METAL ADDFILTER‏‎ (6,932 views)
349. Biostatistics 815 Term Project‏‎ (6,898 views)
350. Biostatistics 666: Multipoint Analysis in Sibling Pairs‏‎ (6,871 views)
351. Links to Sequence Analysis Tools‏‎ (6,868 views)
352. METAL SOURCE‏‎ (6,843 views)
353. UMAKE-glfSingle‏‎ (6,814 views)
354. Mary Kate Wing‏‎ (6,746 views)
355. BamUtil: explainFlags‏‎ (6,718 views)
356. SeqShop: Calling Your Own Genome, June 2014‏‎ (6,700 views)
357. RAREFY FAQ‏‎ (6,680 views)
358. Biostatistics 666: Applications of the Lander-Green Algorithm‏‎ (6,670 views)
359. Biostatistics 666: Advanced Coalescent, Computation with the Coalescent‏‎ (6,669 views)
360. Biostatistics 666: Analysis of Low Pass Sequence Data‏‎ (6,625 views)
361. Minimac4 - Full List of Options‏‎ (6,574 views)
362. ThunderVCF‏‎ (6,515 views)
363. Gene Ontology‏‎ (6,503 views)
364. BAM to FASTQ‏‎ (6,488 views)
365. Tutorial: EMMAX GotCloud STOM: Lecture 5‏‎ (6,418 views)
366. Kyoto Encyclopedia of Genes and Genomes‏‎ (6,393 views)
367. Biostatistics 666: Contemporary Human Genetics‏‎ (6,391 views)
368. METAL EFFECTLABEL‏‎ (6,359 views)
369. Biostatistics 666: Relationship Checking‏‎ (6,349 views)
370. METAL VERBOSE‏‎ (6,237 views)
371. Biostatistics 666: Linkage Tests for Pairs of Individuals‏‎ (6,214 views)
372. SplitRef‏‎ (6,150 views)
373. IMPUTE2‏‎ (6,106 views)
374. SeqShop: Aligning Your Own Genome, May 2015‏‎ (5,988 views)
375. TinySimulator‏‎ (5,879 views)
376. VcfGenomeStat‏‎ (5,867 views)
377. Tutorial: EMMAX GotCloud STOM: Lecture 2‏‎ (5,860 views)
378. Trial Enrichment‏‎ (5,849 views)
379. METAL LOGPVALUE‏‎ (5,805 views)
380. GotCloud: Filters‏‎ (5,795 views)
381. Biostatistics 666: Analysis of Copy Number Using Sequence Data‏‎ (5,684 views)
382. SeqShop: Aligning Your Own Genome, June 2014‏‎ (5,657 views)
383. Biostatistics 830: Core Competencies‏‎ (5,656 views)
384. METAL COLUMNCOUNTING‏‎ (5,654 views)
385. SeqShop: Ancestry On Your Own Genome, June 2014‏‎ (5,627 views)
386. Tandem Repeat Concepts‏‎ (5,623 views)
387. Hardy Weinberg equilibrium‏‎ (5,621 views)
388. SardiNIA project meeting July 15-16, 2013‏‎ (5,610 views)
389. Example‏‎ (5,565 views)
390. Biostatistics 830: Fall 2013 Edition‏‎ (5,322 views)
391. Biostatistics 666: Advanced Haplotype Estimation‏‎ (5,235 views)
392. Biostatistics 666: The Lander-Green Algorithm‏‎ (5,201 views)
393. Garlic‏‎ (5,199 views)
394. An example of using libcsg‏‎ (5,170 views)
395. GotCloud: Reference Files‏‎ (5,128 views)
396. Read Mapping‏‎ (5,121 views)
397. Biostatistics 666: Copy Number Variation‏‎ (5,064 views)
398. Biostatistics 666: The Possible Triangle Constraint‏‎ (4,911 views)
399. 830 - MINIMAC::main()‏‎ (4,884 views)
400. AWS Resources‏‎ (4,864 views)
401. C++ Class: Pedigree Example‏‎ (4,855 views)
402. Ben Lerch‏‎ (4,825 views)
403. NHLBI Exome Sequencing Project‏‎ (4,821 views)
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405. 830 - Haplotyper::SampleHaplotypes()‏‎ (4,817 views)
406. Biostatistics 666: Likelihood Calculations for Large Pedigrees‏‎ (4,716 views)
407. Understanding QPLOT output‏‎ (4,690 views)
408. 830 - Haplotyper::SampleOneHaplotype()‏‎ (4,593 views)
409. GBR60vc.conf‏‎ (4,565 views)
410. GotCloud: RedHat Package‏‎ (4,541 views)
411. 830 - Haplotyper::ImputeGenotypes()‏‎ (4,493 views)
412. Tutorial: EMMAX GotCloud STOM: Lecture 6‏‎ (4,457 views)
413. TrioCaller:Archive‏‎ (4,332 views)
414. 830 - BestAlignment::ClearPositions()‏‎ (4,320 views)
415. RareMetals‏‎ (4,315 views)
416. Vcf2geno‏‎ (4,219 views)
417. Biostatistics 866: Core Competencies‏‎ (4,219 views)
418. SAV Command Line Interface‏‎ (4,175 views)
419. 830 - Haplotyper::ImputeGenotypes() (internal)‏‎ (4,062 views)
420. 830 - Haplotyper::ScoreLeftConditional()‏‎ (4,049 views)
421. 830 - MarkovModel::Condition()‏‎ (4,003 views)
422. Savvy C++ Library‏‎ (3,993 views)
423. 830 - Haplotyper::RandomSetup()‏‎ (3,920 views)
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425. SAM/BAM Convert Sequence‏‎ (3,891 views)
426. Gzip File‏‎ (3,852 views)
427. SeqShop: Friday - Practicing what we learned, June 2014‏‎ (3,852 views)
428. 830 - BestAlignment::MaqAlignment()‏‎ (3,840 views)
429. PileupBasedVariantCalling‏‎ (3,813 views)
430. 830 - Haplotyper::SampleChromosomes()‏‎ (3,788 views)
431. AWS Credentials‏‎ (3,717 views)
432. Sara Rashkin‏‎ (3,713 views)
433. 830 - Haplotyper::SummarizeOptions()‏‎ (3,660 views)
434. 830 - Haplotyper::ConditionOnData()‏‎ (3,643 views)
435. FamRvTest tutorial‏‎ (3,643 views)
436. MaCH: Pedigree with Integer Allele Codes‏‎ (3,620 views)
437. CHARGE‏‎ (3,531 views)
438. 830 - Haplotyper::SetupPrior()‏‎ (3,511 views)
439. 830 - Haplotyper::ImputeGenotypes() (edge)‏‎ (3,500 views)
440. Ancestry‏‎ (3,490 views)
441. Tramp‏‎ (3,432 views)
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443. Ann Arbor Travel Basics‏‎ (3,347 views)
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445. 830 - MarkovModel::Transpose()‏‎ (3,340 views)
446. Git Cheat Sheet‏‎ (3,329 views)
447. 830 - BestAlignment::EvaluateAlignment() (main loop)‏‎ (3,324 views)
448. BamPileup‏‎ (3,317 views)
449. 830 - MaqIndex::LookupWord()‏‎ (3,271 views)
450. Mantra.cpp‏‎ (3,199 views)
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452. GotCloud: AMIs‏‎ (3,124 views)
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454. 830 - BestAlignment::IterateCache()‏‎ (3,071 views)
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456. Makefile.tool‏‎ (2,983 views)
457. RAREMETALWORKER X‏‎ (2,971 views)
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464. CigarRoller Proposed Update‏‎ (2,753 views)
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467. 830 - MaqIndex::GetWord()‏‎ (2,686 views)
468. StringMap.h‏‎ (2,670 views)
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472. Outcomes For Mapping A Paired End‏‎ (2,421 views)
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475. HAPMIX‏‎ (2,200 views)
476. Polymutt beta‏‎ (1,996 views)
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479. SAM: Filtering Reads‏‎ (1,906 views)
480. IGFPipe‏‎ (1,898 views)
481. Rare-metal-worker‏‎ (1,849 views)
482. Imputation Server: Example‏‎ (1,833 views)
483. C++ Class Averages‏‎ (1,817 views)
484. MetaMinimac‏‎ (1,756 views)
485. Dosage convertor‏‎ (1,630 views)

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