File list
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| Date | Name | Thumbnail | Size | User | Description | Versions |
|---|---|---|---|---|---|---|
| 03:35, 4 December 2017 | 666.2012.01 - De Novo Assembly.pdf (file) |  |
540 KB | Goncalo | 1 | |
| 04:43, 3 December 2012 | 666.2012.01.pdf (file) | |
505 KB | Goncalo | Added discussion of Lander Waterman results on contig lengths. | 2 |
| 02:07, 21 November 2012 | 666.2011.02.pdf (file) | |
689 KB | Goncalo | Minor update; added empirical distribution of read pair distances from QPLOT | 3 |
| 14:58, 28 November 2012 | 666.2011.01.pdf (file) | |
841 KB | Goncalo | Typo fixes. | 4 |
| 02:06, 21 November 2012 | 666.2010.05.pdf (file) | |
503 KB | Goncalo | Minor typo fixes | 3 |
| 00:32, 14 November 2012 | 666.2010.04.pdf (file) | |
1.24 MB | Goncalo | Minor updates, adding Ion Torrent as a sequencing technology and adding some specific numbers to illustrate the scale of genetic variation that can be reached by sequencing. | 3 |
| 06:33, 12 November 2012 | 666.2010.03.pdf (file) | |
1.01 MB | Goncalo | Adds a summary slide. | 5 |
| 05:24, 22 October 2012 | 666.2010.02.pdf (file) | |
405 KB | Goncalo | Updated lecture to include example from an actual affected sibling pair study. The lecture is still far too long. | 4 |
| 08:59, 1 November 2017 | 666.2010.01 - Power of Genomewide Studies.pdf (file) | |
930 KB | Goncalo | 2 | |
| 11:07, 9 November 2010 | 666.2010.01.pdf (file) | |
1.49 MB | Goncalo | Lecture on power calculation for genomewide association studies. Also introduces the idea of two stage genomewide association studies. ** Lots of typos fixed in this version ** | 2 |
| 05:22, 3 December 2012 | 666.20.pdf (file) | |
509 KB | Goncalo | This version adds a tiny bit more detail on the use of empirical kinship coefficients. | 5 |
| 00:54, 8 April 2010 | 666.19.pdf (file) | |
1.24 MB | Goncalo | 3 | |
| 00:50, 1 April 2010 | 666.18.pdf (file) | |
736 KB | Goncalo | Introduces the Lander-Green algorithm. | 1 |
| 03:33, 31 October 2012 | 666.17.pdf (file) | |
208 KB | Goncalo | 5 | |
| 03:33, 31 October 2012 | 666.16.pdf (file) | |
941 KB | Goncalo | Minor typo fix. | 6 |
| 07:09, 23 March 2010 | 666.15.pdf (file) | |
1.02 MB | Goncalo | Shows how a simple disease model can be used to predict IBD probabilities for relative pairs. Introduces possible triangle constraint. | 1 |
| 07:17, 18 March 2010 | 666.14.pdf (file) | |
1.7 MB | Goncalo | 1 | |
| 04:27, 26 October 2010 | 666.13.pdf (file) | |
707 KB | Goncalo | Added a summary slide at the beginning. | 3 |
| 06:16, 3 October 2012 | 666.12.pdf (file) | |
224 KB | Goncalo | Minor edits. | 5 |
| 03:53, 7 October 2010 | 666.11.pdf (file) | |
466 KB | Goncalo | Minor typos fixed. | 2 |
| 02:25, 26 September 2012 | 666.10.pdf (file) | |
103 KB | Goncalo | Minor tweaks. Now explicitly mentions use of the E-M algorithm to estimate subpopulations and their frequencies or for calling genotype clusters. | 3 |
| 01:51, 5 October 2010 | 666.09.pdf (file) | |
344 KB | Goncalo | Fixes several typos. | 4 |
| 01:51, 5 October 2010 | 666.09.Master.pdf (file) | |
347 KB | Goncalo | Minor clarification of different uses of N. | 2 |
| 01:17, 11 February 2010 | 666.08.pdf (file) | |
423 KB | Goncalo | Advanced guest lecture by Sebastian Zoellner. Focused on computation methods related to the coalescent. February 4, 2010. | 1 |
| 01:16, 11 February 2010 | 666.07.pdf (file) | |
344 KB | Goncalo | Advanced lecture on the coalescent by guest lecturer, Sebastian Zoellner. Focused on coalescent modeling with changing population sizes. February 2, 2009. | 1 |
| 23:05, 18 September 2012 | 666.06.pdf (file) | |
779 KB | Goncalo | 4 | |
| 08:34, 28 September 2011 | 666.05.pdf (file) | |
210 KB | Goncalo | Added frequency spectrum from 12,000 individuals. | 2 |
| 05:53, 18 September 2017 | 666.04 - The Coalescent.pdf (file) | |
785 KB | Goncalo | 1 | |
| 08:35, 28 September 2011 | 666.04.pdf (file) | |
230 KB | Goncalo | Minor typo corrections. | 4 |
| 08:40, 10 September 2012 | 666.03.pdf (file) | |
997 KB | Goncalo | Minor updates. | 6 |
| 02:24, 14 September 2010 | 666.02.pdf (file) | |
1.22 MB | Goncalo | 3 | |
| 05:46, 7 September 2010 | 666.01.pdf (file) | |
242 KB | Goncalo | Biostatistics 666 Introductory Lecture as of 2010/09/07 | 2 |
| 08:39, 11 April 2017 | 2017.04 - Adventures in Human Genetics.pdf (file) | |
9.57 MB | Goncalo | 1 | |
| 10:16, 20 May 2015 | 2015.05 - Workshop Intro.pdf (file) | |
3.12 MB | Mktrost | 1 | |
| 10:40, 22 May 2015 | 2015.05 - Workshop Closing.pdf (file) | |
3.22 MB | Mktrost | 1 | |
| 05:27, 8 December 2014 | 2014.12 - Workshop Introduction.pdf (file) | |
1.51 MB | Goncalo | 1 | |
| 13:05, 12 December 2014 | 2014.12 - Workshop Closing.pdf (file) | |
4 MB | Goncalo | 1 | |
| 11:01, 20 June 2014 | 2014.06 - Workshop Closing.pdf (file) | |
1,011 KB | Goncalo | 1 | |
| 05:30, 16 June 2014 | 2014.06 - Abecasis Workshop Introduction.pdf (file) | |
2.18 MB | Goncalo | 1 | |
| 12:07, 2 August 2013 | 2013.07 - Overton Award Final.pdf (file) | |
6.86 MB | Goncalo | 1 | |
| 13:48, 4 July 2011 | 20110622-seq-grp-mtg-hmk.pdf (file) | |
634 KB | Hmkang | 1 | |
| 02:15, 5 September 2012 | 2011.666.01.pdf (file) | |
824 KB | Goncalo | Yet more minor edits, this time listing potential group projects. | 3 |
| 09:41, 10 October 2011 | 2011.09 - Exome Chip.pdf (file) | |
531 KB | Goncalo | Summary of exome chip design process and content. | 1 |
| 18:51, 22 March 2010 | 2009.08 Group Retreat Photo.jpg (file) |  |
4.91 MB | Zhanxw | 2 | |
| 15:49, 17 June 2010 | 12345.JPG (file) |  |
1 KB | AssaSom | 1 | |
| 12:02, 14 December 2012 | 1000Genomes march2012 imputation analysis plan 08312012 v2.pdf (file) | |
472 KB | Clement Ma | 1 | |
| 10:56, 11 October 2012 | 1000Genomes march2012 imputation analysis plan 08312012.pdf (file) | |
179 KB | Clement Ma | 1 | |
| 18:40, 10 April 2014 | 1000G.SNV.clean.MAF0.05.tbl.gz (file) |  |
16.6 MB | Bingshan | 1 | |
| 09:58, 25 January 2017 | 01. Genotype Imputation.pdf (file) | |
1.04 MB | Goncalo | 1 | |
| 09:58, 25 January 2017 | 00. Warm-up to Genomewide Analyses.pdf (file) | |
3.03 MB | Goncalo | 1 |
